SE2020328

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5530
  • Medicago truncatula
  • SE2020328
  • Mutator
  • M39
  • MtChr3:26692483-26692856
  • TTTTTCATA
  • AGGCTAAAATATGGTTTTAGTCCCTGCAAATATGCCTCGTTTTGGTTTTAGTCCCTGGTAAAAAAAAAATTGTTTTTGGTCCCTGCAATTTTTTTTGTTTTTG

Secondary structure and sequence

TSD    TIR
5'



3' 
TTTTTCAT                                                                    A                   T              AAAATA   CCTGACCCCACTTTTGTGATGATTTGCATACGTGGCACATTATAACTGAACCAATTTTGTAGTTTTTGGT
        AGGCTAAAATATGGTTTTAGTCCCTGCAAATATGCCTCGTTTTGGTTTTAGTCCCTGGTAAAAAAAAA TTGTTTTTGGTCCCTGCAA TTTTTTTGTTTTTG      GTC                                                                      
        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||      |||                                                                      C
        TCCGATTTTATACCAAAATCAGGGACGTTTATACGGAGCAAAACCAAAATCAGGGACTATTTTTTTTT AACAAAAACCAGGGACGTT AAAAAAACAAAAAC      CAG                                                                      
ATACTTTT                                                                    -                   T              ------   GGAAGTCCCTGATAAAAGTTTTTGTTTTTTAAAATGTTCCTGGAAAAAATTTTTGTTTTATAAAACGTCC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3