SE2020331

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5533
  • Medicago truncatula
  • SE2020331
  • Mutator
  • M4
  • MtChr3:2397862-2398256
  • ATGTTTTTA
  • GGGTTAATAGTGTTTTACCCCCCTGTAATATAGGTCATTTCCGGTTTTTCCCCCTGTAAAATATTTTTTTTGAATTTCATCCTTGTAATTTGAAGATTTTTTGGTTTTGGACCTTCATG

Secondary structure and sequence

TSD    TIR
5'



3' 
ATGTTTTTA                                                T               T             A              A       T                 GAAAATTTCACTC  TGT     GAGCAAATTTAGGTTTACCCCCTTGTAATTTGAGAAAATTTCGGTTTACCCCCCT
         GGGTTAATAGTGTTTTACCCCCCTGTAATATAGGTCATTTCCGGTTTT CCCCCTGTAAAATAT TTTTTTGAATTTC TCCTTGTAATTTGA GATTTTT GGTTTTGGACCTTCATG             CC   AATTT                                                       
         |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||| ||||||| |||||||||||||||||             ||   |||||                                                        
         CCCAATTATCACAAAATGGGGGGACATTATATCCAGTAAAGGCTAAAA GGGGGACATTTTATA AAAAAACTTAAAG AGGAACATTAAACT CTAAAAA CCAAAACCTGGAAGTAC             TT   AAAAC                                                       
ATTTTTGTA                                                T               T             C              A       -                 -------------  ---     TGTCATGTTTTAGCTTCTATAGTATCCCCCATTTGGTTTTAAACGAGTTTAATTG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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