Plant MITE

SE2010334

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5536
Medicago truncatula
SE2010334
Tc1/Mariner
St20
MtChr3:43983605-43983898
TA
GTCCC

Secondary structure and sequence

TSD TIR

5'

3'

TACTCCCTCC     ATTTTAACCGAGC     G ---       ------    ATATTAAGAAAAAGTGTATAAGTGAAAGAGAAAGAAAAATAGTTTTGAGTGTGTCAAATATTGATGCATTCCTTCTTATCATAGATGCAAAATAGAATATATT
          GTCCC             CTTTT T   TCATTTG      ACAC                                                                                                       
          |||||             ||||| |   |||||||      ||||                                                                                                       G
          CAGGG             CATTA T   CTCAGTA      CTTT                                                                                                       
ATAGTATAAA     -------------     - TAG       AACGTC    TGTAATAAGGTTTTTTTAACTGCTTAAAGTGAAAAGTTATGTTATTATTAATGAAAAAAAAGTTAATACTGAGATTAATTATAATGAAAGTAGTGAGGATTAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2010334

TACTCCCTCCGTCCCATTTTAACCGAGCCTTTTGTTCATTTGACACATATTAAGAAAAAGTGTATAAGTGAAAGAGAAAGAAAAATAGTTTTGAGTGTGTCAAATATTGATGCATTCCTTCTTATCATAGATGCAAAATAGAATATATTGAATTAGGAGTGATGAAAGTAATATTAATTAGAGTCATAATTGAAAAAAAAGTAATTATTATTGTATTGAAAAGTGAAATTCGTCAATTTTTTTGGAATAATGTTTTCCTGCAAATGACTCGATTATTACGGGACAAATATGATA

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