SE2010340

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5542
  • Medicago truncatula
  • SE2010340
  • Tc1/Mariner
  • St4
  • AC151525:120146-120298
  • TA
  • TACACCCTCCGATCACTATTATAAGCAAAAATCAACATTTTATTAGATTCATTCATTAAATGTGTATGTGGTCT

Secondary structure and sequence

TSD    TIR
5'



3' 
           A                     AAC    TAT            TTA    -            ATA
TACACCCTCCG TCACTATTATAAGCAAAAATC   ATTT   TAGATTCATTCA   AATG TGTATGTGGTCT   
||||||||||| |||||||||||||||||||||   ||||   ||||||||||||   |||| ||||||||||||   A
ATGTGGGAGGC AGTGATAATATTCGTTTTTAG   TAAA   ATCTAAGTAAGT   TTAC ACATATACTAGA   
           C                     ATA    ---            TAA    T            AAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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