Plant MITE

SE2030341

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5543
Medicago truncatula
SE2030341
hAT
Hat27
MtChr8:17234264-17234883
GGCAAGGT
GGTTAGAGCTGTCAAAACAGGCGGCCCGGGCC

Secondary structure and sequence

TSD TIR

5'

3'

GGCAA G                A  -   ---------C    G  AAAA           ------AAAAC      G      ACTA    ----------     GGCCCTACACGGGCCGGCCCGTATTAAAAATTATATTTCTTTTTATAAATAATATTTTTAATATATTTAAATAATGCCTAGAACAAAAATAAATTGTAAACATTTTTGTACAAACGTCGTAAACTAAAACGGCAAGGAAAACAATTTTGAATAAATTCGATACGTTATGGTTATAGATATTTATATTTTCGATCTTTAAAATTATAAATAACGA
     G TTAGAGCTGTCAAAAC GG CGG          CCGG CC    AGCCCGGTTGA           GGGCTT AAATAT    CCCG          AGCCC                                                                                                                                                                                                                      
     | |||||||||||||||| || |||          |||| ||    |||||||||||           |||||| ||||||    ||||          |||||                                                                                                                                                                                                                       
     C GATCTCGACAGTTTTG CC GCC          GGCC GG    TCGGGCTAATT           CCCGGA TTTATA    GGGC          CCCGA                                                                                                                                                                                                                      
TGGAA G                C  A   CAGCATACCC    A  CAAA           AATATCTCTAA      A      ACTC    TTAAAATTAT     AAAATCGGGTCGGGATTTTTCGGGCGATGGGCAATCCCGATCGGGCTCGCCCGGCTCCCATCGGGCGATCGGGCGTATTATTTTTTTTAGGATATTTAATATATATAAAACGTTTATTAAGAAATGAATCAACTAATAGTTTCATTATTTATATTCACTTTTAAGTTACTTAATTGTGTTTATATGTACATTATATTTTAATATAAATGAGCAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2030341

GGCAAGGTTAGAGCTGTCAAAACAGGCGGCCCGGGCCAAAAAGCCCGGTTGAAAAACGGGCTTGAAATATACTACCCGAGCCCGGCCCTACACGGGCCGGCCCGTATTAAAAATTATATTTCTTTTTATAAATAATATTTTTAATATATTTAAATAATGCCTAGAACAAAAATAAATTGTAAACATTTTTGTACAAACGTCGTAAACTAAAACGGCAAGGAAAACAATTTTGAATAAATTCGATACGTTATGGTTATAGATATTTATATTTTCGATCTTTAAAATTATAAATAACGAAACGAGTAAATATAATTTTATATTACATGTATATTTGTGTTAATTCATTGAATTTTCACTTATATTTATTACTTTGATAATCAACTAAGTAAAGAATTATTTGCAAAATATATATAATTTATAGGATTTTTTTTATTATGCGGGCTAGCGGGCTACCCTCGGCCCGCTCGGGCTAGCCCTAACGGGTAGCGGGCTTTTTAGGGCTGGGCTAAAAAGCCCTATTAAAATTCGGGCTCAATATTTAAGGCCCAATCTCTATAATTAATCGGGCTAAACGGACCGGCCCATACGACCCGACCCGTTTTGACAGCTCTAGGCAAGGT

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