SE2020344

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5546
  • Medicago truncatula
  • SE2020344
  • Mutator
  • M39
  • MtChr7:33276723-33277025
  • TAAAAATTG
  • TTGGGCTAAAATATGATTTTGGTCCCTGCAAATATGTCTCGTTTTGGTTTTAGTCCCTGTAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TAAAAA               A                                        C      AAAAA                    ACTCC   T     AT        C CGTGACACATGATGACTGAACCCATTTATTAG
      TTGGGCTAAAATATG TTTTGGTCCCTGCAAATATGTCTCGTTTTGGTTTTAGTCC TGTAAA     TTTGTTGTTTTTGGTCCCTG     ACT TTGTG  GATTTGCA A                                
      ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||     ||||||||||||||||||||     ||| |||||  |||||||| |                                 
      AATCCGATTTTATAC AAAACCAGGGACGTTTATACAGAGCAAAACCAAAATCAGG ACATTT     AAACAACAAAAACCAGGGAC     TGA AACGT  CTGATAAA A                                
GTTAAA               C                                        A      AAAAA                    GTCCA   T     CC        - GTTTTTGTTTTATAAAACGTCCCTGATAAAGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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