SE2020349

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5551
  • Medicago truncatula
  • SE2020349
  • Mutator
  • M50
  • MtChr7:2728999-2729394
  • TTATATTAT
  • GGGTTAATAGTGCTTTACCCCTCTGTAATATAGGTCATTTTCGGTTTTCCACCCTGTAAAATTTTTTGTTTGGTTTTCGTCCTTGTAATTTGAAGATTTTTGGTTTTGGACCTTCATG

Secondary structure and sequence

TSD    TIR
5'



3' 
TTATATTAT                                                                  T                                  -         C       A    --  ACAGTACAAAATCGACGATATGTCAGGGGGCTAAACCGAAATTCACTCAAATTAACAGGGGGG
         GGGTTAATAGTGCTTTACCCCTCTGTAATATAGGTCATTTTCGGTTTTCCACCCTGTAAAATTTTT GTTTGGTTTTCGTCCTTGTAATTTGAAGATTTTT GGTTTTGGA CTTCATG ATTT  TG                                                               
         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||  ||                                                                
         CCCAATTATCACGAAATGGGGAGACATTATATCCAGTAAAAGCTAAAAGGTGGGACATTTTAAAAA CAAATCAAAAGCAGGAACATTAAACTTCTAAAAA CCAAAATCT GAAGTAC CTTT  AA                                                               
TATTATATT                                                                  C                                  A         T       -    TA  GCGGGGAACATTAAACTCTTTTAAAGCCAAATACGGGGTTTTTAAACTCGTTTAAAAACAAAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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