SE2020352

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5554
  • Medicago truncatula
  • SE2020352
  • Mutator
  • M79
  • MtChr1:777618-777983
  • TTAAAAATA
  • AGGCTTAATAGCAGTTTTGATCCCCTATATTTCAAGAGGTTGCGATTTTGGCCCCCTAACAAAATAAAATACAAAATTGTCCCCTAAGTATTGCCCATTTTGCAGTTTTGGCCCCCCTAGGTCAATTTTGAACAAGTCAAAGCTGATGTGGACGCCACATGTGTAATTTTTTTAATTATTAAAAAAATACACATGTGGCGTCCACGTGTGCATTAACTTGGTTAAATTTGGTCTATGGGCCAAAACTGCAAAATGGACAATACTTAGGGGGCGTTTTGTATTTTATTTTGGTTAGGGGGTTAAAATCATAACTTCTTAAAACATAGGGGGCCAAAACTGCTATTAAGCCT

Secondary structure and sequence

TSD    TIR
5'



3'
TTAAAAAT                   A        A   C         C                 -                 T               C                    CCC        T     A     C  A  TG                    A         T
        AGGCTTAATAGCAGTTTTG TCCCCTAT TTT AAGAGGTTG GATTTTGGCCCCCTAAC AAAATAAAATACAAAAT GTCCCCTAAGTATTG CCATTTTGCAGTTTTGGCCC   TAGGTCAA TTTGA CAAGT AA GC  ATGTGGACGCCACATGTGTA TTTTTTTAA 
        ||||||||||||||||||| |||||||| ||| ||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||   |||||||| ||||| ||||| || ||  |||||||||||||||||||| ||||||||| T
        TCCGAATTATCGTCAAAAC GGGGGATA AAA TTCTTCAAT CTAAAATTGGGGGATTG TTTTATTTTATGTTTTG CGGGGGATTCATAAC GGTAAAACGTCAAAACCGGG   ATCTGGTT AAATT GTTCA TT CG  TGCACCTGCGGTGTACACAT AAAAAAATT 
ATAAAAAT                   C        C   A         A                 G                 -               A                    --T        T     G     A  A  TG                    -         A

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End