Plant MITE

SE2020355

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5557
Medicago truncatula
SE2020355
Mutator
M12
AC235756:32204-32480
CAAGATGCA
GGCTGCGGTTATGGTGCATA

Secondary structure and sequence

TSD TIR

5'

3'

CAAGATGCA  C                 TATA  T               ATC   -       A         C  T    TGTATTCC   -        ATGTACTTAATGGTTTTCAGCACCCTGCATATATCATAGTATGT
         GG TGCGGTTATGGTGCATA    AG AAATCCTTATGCATC   CAT AAATCTA AAATGGTTT TG GAGT        AAA ACCATTAG                                            
         || |||||||||||||||||    || |||||||||||||||   ||| ||||||| ||||||||| || ||||        ||| ||||||||                                             
         CC ACGTCAATACCACGTAT    TC TTTAGGAATACGTGG   GTA TTTAGGT TTTATCAAA AC CTCA        TGT TAGTGTCT                                            
 CGTAGAAC  C                 ----  C               GAT   A       C         -  -    --------   T        TTGGTAAAGGTGTCATTTTACCAAAACCGTATTAAAATATGTTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020355

CAAGATGCAGGCTGCGGTTATGGTGCATATATAAGTAAATCCTTATGCATCATCCATAAATCTAAAAATGGTTTCTGTGAGTTGTATTCCAAAACCATTAGATGTACTTAATGGTTTTCAGCACCCTGCATATATCATAGTATGTTTTGTATAAAATTATGCCAAAACCATTTTACTGTGGAAATGGTTTCTGTGATTTGTACTCCAAAACTATTTCTGGATTTAATGTAGGGTGCATAAGGATTTCCTTATGCACCATAACTGCACCCCAAGATGC

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