Plant MITE

SE2020356

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5558
Medicago truncatula
SE2020356
Mutator
M66
MtChr4:6942444-6942807
TATTAAAAA
AGGCTTAATTGCACTTTTGGCCTCTTATCTTTCCAAAAGTTGTGATTTTGGCCCCCCCTAACTAATTAAAATACAAAACAGCTCACTATGTATTGGATCTTTGGCTGTTTTGGCCTCAATGCCACTTTTGACTTAGTCTTCGCTAACGTGGCACCCACA

Secondary structure and sequence

TSD TIR

5'

3'

TATTAAAA                     C  TT      C                     CCC                           A                    T           -                           A              ATA   GACACGTGGC
        AGGCTTAATTGCACTTTTGGC TC  ATCTTT CAAAAGTTGTGATTTTGGCCC   CTAACTAATTAAAATACAAAACAGCTC CTATGTATTGGATCTTTGGC GTTTTGGCCTC AATGCCACTTTTGACTTAGTCTTCGCT ACGTGGCACCCACA   GTC          
        ||||||||||||||||||||| ||  |||||| |||||||||||||||||||||   ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||   |||           
        TCCGAATTAACGTGAAAACTG GG  TAGAAA GTTTTCAACGCTAAAACCGGG   GATTGATTAATTTTATGTTTTGTTGGG GATACATAACCTAGAAACTG CAAAACCGGGG TTACGGTGAAAACTGAATCAGAAGCGA TGCACCGTGGGTGT   GGA          
AAAAATTA                     A  TT      A                     --A                           G                    T           G                           C              -AG   ATTCACTCCA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020356

TATTAAAAAGGCTTAATTGCACTTTTGGCCTCTTATCTTTCCAAAAGTTGTGATTTTGGCCCCCCCTAACTAATTAAAATACAAAACAGCTCACTATGTATTGGATCTTTGGCTGTTTTGGCCTCAATGCCACTTTTGACTTAGTCTTCGCTAACGTGGCACCCACAATAGTCGACACGTGGCACCTCACTTAAGGGATGTGGGTGCCACGTCAGCGAAGACTAAGTCAAAAGTGGCATTGGGGGCCAAAACTGTCAAAGATCCAATACATAGGGGGTTGTTTTGTATTTTAATTAGTTAGAGGGCCAAAATCGCAACTTTTGAAAAGATTTGGAGTCAAAAGTGCAATTAAGCCTATTAAAAA

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