SE2020358

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5560
  • Medicago truncatula
  • SE2020358
  • Mutator
  • M52
  • MtChr8:23377889-23378371
  • TGAAATTAA
  • AATTAAGGCTTAAATGCTCTTTTGGTCCCTTAACTATTTAATTGGTATCGCTTTGGTCCCTTAACTAAAAAAAAGATTGTTTGAGGATTTTAAGTTTTTTTTTAGTCTCGTTTTGGTCCCTTCTGTTAAGTTTCCGTTAGTTTTAATAAAAAACGTTA

Secondary structure and sequence

TSD    TIR
5'



3'
TGA    -A           CTC                                                                                    -                         A         --A       T      C    -AGTG                           --CT           TTTTTACAAAAAAAATAATATTTTTTTTATAAAA
   AATT  AGGCTTAAATG   TTTTGGTCCCTTAACTATTTAATTGGTATCGCTTTGGTCCCTTAACTAAAAAAAAGATTGTTTGAGGATTTTAAGTTTTTTTTT AGTCTCGTTTTGGTCCCTTCTGTTA GTTTCCGTT   GTTTTAA AAAAAA GTTA     TGGATACGTGTCACCTTGTCATTGGTT    GAGTTTTTTTT                                  
   ||||  |||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||   ||||||| |||||| ||||     |||||||||||||||||||||||||||    |||||||||||                                  A
   TTAA  TCCGAATTTAT   AAAACCAGGGAATTGATAAATTAACCATAGCGAAACTAGGGAATTGATTTTTTTTCTAACAAACTCCTAAAATTCAAAAAAAAA TCAGAGCAAAACCAGGGAAGACAAT CAAAGGCAA   CAAAATT TTTTTT CAAT     ACCTGTGCACAGTGGAACAGTAACCAA    CTTAAAAAATA                                  
 AA    AG           ACT                                                                                    A                         C         GCC       -      -    GGATA                           TACC           TTTTTTTATTTTATATATAAATTTTTCTTAAAAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End