SE2050366

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5568
  • Medicago truncatula
  • SE2050366
  • PIF/harbinger
  • To4
  • MtChr4:6784751-6784976
  • TTA
  • AGGGTCCGTTTGGATTAGCTTATTTTAGAGTTTATATAAAATAACTTATGCAAATAAATAAGTTTTTAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT   G         A  -            A      AT             C               T  GTATT              AA    TTTT       AA  G   AT
  AGG TCCGTTTGG TT AGCTTATTTTAG GTTTAT  AAAATAACTTATG AAATAAATAAGTTTT AT     ATTTATAAGTTTTC  GCTA    ATGGAAA  CA GTT  
  ||| ||||||||| || |||||||||||| ||||||  ||||||||||||| ||||||||||||||| ||     ||||||||||||||  ||||    |||||||  || |||  G
  TCC GGGCAAACC AA TCGAATAAAATC CGAATA  TTTTATTGAATAC TTTATTTATTCAAAA TA     TAAATATTCGAGAG  CGAT    TGCTTTT  GT TAG  
AT   G         A  C            -      CT             A               -  -AAAT              --    ----       -A  G   AA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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