SE2050371

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5573
  • Medicago truncatula
  • SE2050371
  • PIF/harbinger
  • To2
  • MtChr4:4394948-4395344
  • TTA
  • AGGCTTTGTTTGGGAGTTTGGAGGGGGAAGGGA

Secondary structure and sequence

TSD    TIR
5'



3' 
TT                           AA    ------------------------------------AG   GGGGAGGGCTTTGGGGGGTTGGAAATATATAGAAAAATGGACAAATAATTCACATTTTTTGAAAGAATAGTTTTTTAGAGAATGATAAACTAATACTTATGATTAATATACTTTTAATTTTAAAAATATTATAGCAAGATA
  AGGCTTTGTTTGGGAGTTTGGAGGGGG  GGGA                                      GGA                                                                                                                                             
  |||||||||||||||||||||||||||  ||||                                      |||                                                                                                                                              
  TCCGAAACAAACCCTCAAACCTCCCCT  CCCT                                      CTT                                                                                                                                             
AT                           -C    CCCAAAATCTTTTTTTCTTCCTCGTTCACCTTCTTTAT   CTGTAAGCCTCCTCTCCCGAAACCTCCAATTAAAAAATGAGTATTATTTTTTAGGGGGAGTAAACCCCCTTGAGTTTTTAACATAACTCCCTCCCAAAACCCCCCAATACCTCTCAAATATACTTAAAAAGTTTAAGTTAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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