Plant MITE

SE2020373

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5575
Medicago truncatula
SE2020373
Mutator
M102
MtChr7:22888626-22888825
TTTATAGTA
TTATAGTAGGACAAAACTTAGGTGCATTTCCTTATGTACTTTTTGTATGGTTCTTCACAT

Secondary structure and sequence

TSD TIR

5'

3'

 T      T                           T  A        A             AAAATTCACTTGTT           AAA TT   GAAA    TGG
  TTATAG AGGACAAAACTTAGGTGCATTTCCTTA GT CTTTTTGT TGGTTCTTCACAT              GTGCTTATAAC   C  TGA    TTTG   
  |||||| ||||||||||||||||||||||||||| || |||||||| |||||||||||||              |||||||||||   |  |||    ||||    
  GATATT TCCTGTTTTGAATCCACGTAAAGGAAT CA GAAAAGTA ACCAAGAAGTGTA              TATGAGTATTG   G  ACT    GAGT   
AT      -                           C  C        C             -----------GTT           ATG TT   -AAA    TTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020373

TTTATAGTAGGACAAAACTTAGGTGCATTTCCTTATGTACTTTTTGTATGGTTCTTCACATAAAATTCACTTGTTGTGCTTATAACAAACTTTGAGAAATTTGTGGATTTGAGAAATCATTGGTAGTTATGAGTATTTGATGTGAAGAACCACATGAAAAGCACCTAAGGAAATGCACCTAAGTTTTGTCCTTTATAGTA

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