SE2020375

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5577
  • Medicago truncatula
  • SE2020375
  • Mutator
  • M25
  • MtChr5:41960699-41960906
  • ATAAAATAA
  • GAGGAATGCTAACAACACTCATTCTAACACACATTTTTCAACACATTCTCTTTAATTGGTTAAAACATACGTGGGTCCCACCAAATCATGTGGATCCCATATAAATTTGATGGATCTCATGTGAGTTTTAACCAATCAAATAGAGTGTGTTGAAAAGCGTGTTTTAGAATGTGTGTTGCTAACATTTCTC

Secondary structure and sequence

TSD    TIR
5'



3' 
ATAAAATAA        C  A      T        C    A                C   A            A        TC   C     -C      A
         GAGGAATG TA CAACAC CATTCTAA ACAC TTTTTCAACACATTCT TTT ATTGGTTAAAAC TACGTGGG  CCA CAAAT  ATGTGG 
         |||||||| || |||||| |||||||| |||| |||||||||||||||| ||| |||||||||||| ||||||||  ||| |||||  |||||| T
         CTCTTTAC AT GTTGTG GTAAGATT TGTG GAAAAGTTGTGTGAGA AAA TAACCAATTTTG GTGTACTC  GGT GTTTA  TATACC 
AATAAAATA        A  C      T        T    C                T   C            A        TA   A     AA      C
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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