Plant MITE

SE2030376

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5578
Medicago truncatula
SE2030376
hAT
Hat4
MtChr8:22870588-22871128
ACGGTGAG
ACGGTGAGTAGGGTTGGGAATAGGCCAGGCC

Secondary structure and sequence

TSD TIR

5'

3'

     G  GAG                            A  G   -----    TGGCCTGGCCTGTTTAAGCCTGGCCTGGCCTGGCCTGTTTATTAAAAAGGCTAGGCTTAGGCTTTTTAAAAAGCCTATTTAAGTAAATAGGCCAGGCTTAGGCTATAAAAAAAGCCTATGAATCCTAATAGGCCGGCCTGTTTATGCATGTTAGGCTTCATAGTGGACTTTTTAAATAGGCTTTAAAGCTTTATAGTGAAATATGTTTTTAAGGCCTTATAG
   AC GT   TAGGGTTGGGAATAGGCCAGGCCGGCCT CA GGG     CCTA                                                                                                                                                                                                                              
   || ||   |||||||||||||||||||||||||||| || |||     ||||                                                                                                                                                                                                                               
   TG CA   ATCCCAACCCTTATCCGGTCCGGTCCGG TC CGA     TCCG                                                                                                                                                                                                                              
GAG  G  ---                            -  -   AACTA    GACTCGGACCGGATGCTTTTTTAAACGTCCGGACTCGGACCGGATACCGGAAAGTATCCGGATAATAAAACCGGACCGGACCGGATAAATTTTCGGATCGGACCGGACTTTCGGATAAATGTCCGGATGAATGATAATTTCAGTGATTTGTAAGGTAAAATAGATGAAAATTTATCCGAATTATCCGAAGTTTCGGATAAGGTCACATTCTAAACAGATAGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2030376

ACGGTGAGTAGGGTTGGGAATAGGCCAGGCCGGCCTACAGGGGCCTATGGCCTGGCCTGTTTAAGCCTGGCCTGGCCTGGCCTGTTTATTAAAAAGGCTAGGCTTAGGCTTTTTAAAAAGCCTATTTAAGTAAATAGGCCAGGCTTAGGCTATAAAAAAAGCCTATGAATCCTAATAGGCCGGCCTGTTTATGCATGTTAGGCTTCATAGTGGACTTTTTAAATAGGCTTTAAAGCTTTATAGTGAAATATGTTTTTAAGGCCTTATAGTGATAGACAAATCTTACACTGGAATAGGCTTTGAAGCCTATTAAGCCTATTTAAAAGTAGATAAAATGGAATGTTTAGTGACTTTAATAGTAAGTAGGCCTGTAAATAGGCTTTCAGGCCAGGCTAGGCTTTTAAATAGGCCAGGCCAGGCCAAAATAATAGGCCTATGAAAGGCCATAGGCCAGGCTCAGGCCTGCAAATTTTTTCGTAGGCCAGGCTCAGGCCTATCAAAGCCTGGCCTGGCCTGGCCTATTCCCAACCCTAACGGTGAG

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