SE2020378

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5580
  • Medicago truncatula
  • SE2020378
  • Mutator
  • M11
  • MtChr2:16157884-16158073
  • TAATTTAAA
  • AGGGTCTTGTTAACGAGTGCCTC

Secondary structure and sequence

TSD    TIR
5'



3' 
TAATTTAA    TCT                TAAA              TC   AA     -  AA    CCT      -------      -A    ACAA
        AGGG   TGTTAACGAGTGCCTC    GCACTCTTTAAGGA  CCA  TTTAG AA  TATT   TAAAAA       AATCAA  TATT    
        ||||   ||||||||||||||||    ||||||||||||||  |||  ||||| ||  ||||   ||||||       ||||||  ||||    A
        TCCC   ACAATTGCTCACGGGG    CGTGAGAAATTCCT  GGT  AGATC TT  ATAA   ATTTTT       TTAGTT  GTAA    
AAATTTAA    TTT                --CC              --   AA     A  CA    --T      ATACACA      AC    CCTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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