SE2020390

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5592
  • Medicago truncatula
  • SE2020390
  • Mutator
  • M8
  • MtChr4:22948748-22949050
  • TATATAAAT
  • TATATAAATGGGTTAATTAAGTTTTTGGTCCCTATAAATATCTGCAATTTTGTTTTTAGTCCCTATAAAAATAAATCACACTTTTTAGTCCCT

Secondary structure and sequence

TSD    TIR
5'



3' 
         AAT                                C    A                       AT                     ACAAA       GTT        T  TCCCTAT     TTTCTGTCAGCA      GTC
   TATATA   GGGTTAATTAAGTTTTTGGTCCCTATAAATAT TGCA TTTTGTTTTTAGTCCCTATAAAA  AAATCACACTTTTTAGTCCCT     ATTTTCT   AGTGTTTT AG       AAAAT            TTTTTA   
   ||||||   |||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||  |||||||||||||||||||||     |||||||   |||||||| ||       |||||            ||||||   C
   ATATAT   CCCAATTAATTCAAAAATCAGGGATATTTATA GTGT AAAACAAAAATCAGGGATGTTTT  TTTAGTGTGAAAAATCAGGGA     TAAAAGG   TCGTAAAA TC       TTTTA            AAAAAT   
TAA      ---                                A    C                       AT                     CACTG       AAT        -  -CCTAAT     CAACTACCTTTA      ATC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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