SE2020392

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5594
  • Medicago truncatula
  • SE2020392
  • Mutator
  • M93
  • MtChr1:22091738-22092173
  • TAGTTTTAA
  • AGGTTTAAATGTGTCATTGGTCCCTGCACTTTCATCAGATTTTGGCATTGGTCCTTGCACTTTTTTTTGTTTGGCATTGGTCCCTGCACTTTGTAAAAATATTGGTATTGGTCCCTCTGTTAACTTTCTGTTAAAAAAAAAAAACACAAAAC

Secondary structure and sequence

TSD    TIR
5'



3' 
TAGTTTTA               A       C  C                                         -      C                                     C                            AA         CAACGGA  GCCACGTGGCCCAATCATTTCACGCCACGTGGCACCAATATCAATATTTTT
        AGGTTTAAATGTGTC TTGGTCC TG ACTTTCATCAGATTTTGGCATTGGTCCTTGCACTTTTTTTT GTTTGG ATTGGTCCCTGCACTTTGTAAAAATATTGGTATTGGT CCTCTGTTAACTTTCTGTTAAAAAAAAA  ACACAAAAC       GT                                                   
        ||||||||||||||| ||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  |||||||||       ||                                                    
        TCCAAATTTATACGG AATCAGG AC TGAAAGTAGTCTAAAATCGTAACCAGGGATGTGAAAAAAAA CAAACC TAACCAGGGACGTGAAACATTTTTATAACCATAACCA GGAGATAATTGAAAGACAATTTTTTTTT  TGTGTTTTG       CC                                                   
AATTTTGA               A       A  A                                         A      T                                     A                            --         ---ATAA  ATAACCAGGGACGTGAAACATTTTTATAACCATAACCAGGGACGTGAAACA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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