SE2010394

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5596
  • Medicago truncatula
  • SE2010394
  • Tc1/Mariner
  • St6
  • MtChr8:16648229-16648525
  • TA
  • TACTCCCTCCGTCCCAGTTTAACTGAGCCA

Secondary structure and sequence

TSD    TIR
5'



3' 
                          G   ----------------GTTT     TTCACACAGATTAAGAAAAGTGTATAAAGTAAAGAGAGAGAAAAATAGTTTTGAGTGCCTTTTTCAAGTATTGGTGCATTCTTCTTTATCATAAATGTAAA
TACTCCCTCCGTCCCAGTTTAACTGA CCA                    TCCAT                                                                                                     
|||||||||||||||||||||||||| |||                    |||||                                                                                                     C
ATGAGGGAGGCAGGGTCAAATTGACT GGT                    GGTTC                                                                                                     
                          G   AAACATTTTTTTATAACAGG     TTAGAACTGGGTAAAGTGAAAAGTTACGTTGTAATTAATGAAAAGAGGTTAATATTGAGATTAATTATGATGAAAGTGTTGAGGGTTAAGTTATATAAGAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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