SE2010395

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5597
  • Medicago truncatula
  • SE2010395
  • Tc1/Mariner
  • St24
  • MtChr3:40626908-40627192
  • TA
  • TACTCCCTCCGTCCCAAATTGTATGACGTTTTGG

Secondary structure and sequence

TSD    TIR
5'



3' 
                         A        ------------CCAT        --      GAAATGTAATTAATATTGTGTGGGGAAGAGAAATTATGAATTGTTTTACAAAATTATCCTTAATAAATGGTATGGAAAAGATA
TACTCCCTCCGTCCCAAATTGTATG CGTTTTGG                TTCACACG  TATTAA                                                                                   
||||||||||||||||||||||||| ||||||||                ||||||||  ||||||                                                                                   A
ATGAGGGAGGCAGGGTTTAACATAC GCGAAACC                TTTAATAT  AGCGAA                                                                                   
                         A        TTTTTTTTAAACAGGG        AC      ATGTTATGGTTACTTTATAATTACAATGAAAAGGATAATATAGGAATTAAGAATTAATGAGGGATAAGAAAGTTAATAAAGTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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