Plant MITE

SE2010396

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5598
Medicago truncatula
SE2010396
Tc1/Mariner
St26
MtChr1:30709853-30710129
TA
TACTCCCTCCGTCTCTAAATAATAGTC

Secondary structure and sequence

TSD TIR

5'

3'

      C        TA      A   ----------------------GT        GAT      -   CTAAGAAAATGATTAATTGTGTTGATTTTGATGGTAAAATTAGTATCATTTACTAAAACACCCTTATTAATTGTAGTTA
TACTCC TCCGTCTC  AATAAT GTC                        TTAAGATT   GCACGG TTA                                                                               
|||||| ||||||||  |||||| |||                        ||||||||   |||||| |||                                                                               G
ATGAGG AGGCAGAG  TTATTA CAG                        TTTTATTA   ACAGTG AAT                                                                               
      T        TG      A   AAAAATGGGTAAAAAGAAAAAGAG        ---      A   CTTATGATTACGTTGTAAATAATAAAAAAAAGTAATATTATGGGAATAAATAACTTGAAGTAGGTTGAATTGATGAGGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2010396

TACTCCCTCCGTCTCTAAATAATAGTCGTTTAAGATTGATGCACGGTTACTAAGAAAATGATTAATTGTGTTGATTTTGATGGTAAAATTAGTATCATTTACTAAAACACCCTTATTAATTGTAGTTAGTGGAGTAGTTAAGTTGGATGAAGTTCAATAAATAAGGGTATTATAATGAAAAAAAATAATAAATGTTGCATTAGTATTCTAAAGTGACAATTATTTTGAGAAAAAGAAAAATGGGTAAAAAGACAATTATTGTGAGACGGATGGAGTA

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