Plant MITE

SE2030405

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5607
Medicago truncatula
SE2030405
hAT
Hat31
AC235567:19871-20163
CTAGTACA
GTACACAGGGGCGGATCT

Secondary structure and sequence

TSD TIR

5'

3'

CTA    --A   G         -    AGGGACCCCTGGGAGCCATGGTACCCCCCCAGATATTCTATATATATTAGATTAGGCATAATATGTATACTAGAACTCAGAAGGTGCAGTGGAAATGATGTTTGATTTTCCATCAGAGGTC
   GTAC   CAG GGCGGATCT TCCC                                                                                                                         
   ||||   ||| ||||||||| ||||                                                                                                                          
   CATG   GTC CCGCCTAGA CTTT                                                                                                                         
  A    ATC   A         A    ATAAAAGAACCCCCACGGTCTTAACATACTTTATATATAATTCAACAAAGTTCTCTTCCTATATTAACAATTGACCAGGTCACCAAACAAAACGAACTTACGTCTCGTCCCAGCTTGAGCG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2030405

CTAGTACACAGGGGCGGATCTTCCCAGGGACCCCTGGGAGCCATGGTACCCCCCCAGATATTCTATATATATTAGATTAGGCATAATATGTATACTAGAACTCAGAAGGTGCAGTGGAAATGATGTTTGATTTTCCATCAGAGGTCGCGAGTTCGACCCTGCTCTGCATTCAAGCAAAACAAACCACTGGACCAGTTAACAATTATATCCTTCTCTTGAAACAACTTAATATATATTTCATACAATTCTGGCACCCCCAAGAAAATATTTCAAGATCCGCCACTGCTAGTACA

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