SE2020409

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5611
  • Medicago truncatula
  • SE2020409
  • Mutator
  • M39
  • MtChr3:1753625-1754006
  • TAAAAAGAA
  • AGGCTAAAATATGGTTTTGGTCCCTGCAAATATGCTTCGTTTTGGTTTTAGTCCCTGTAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TAAAAAGA   C                   C          C                         -------------AAT     TG     TTTG    -    -----------       -  -    ---    AAAATAATCCCTCCAGGGACTATTTTCAGAAGTAAAATATTTTGCAGGGACGTTTTTACAAATCAA
        AGG TAAAATATGGTTTTGGTCC TGCAAATATG TTCGTTTTGGTTTTAGTCCCTGTAA                TTTTG  TTGTA    GTCC CTGC           AAAATAT TT TGTT   TTTG                                                                  
        ||| ||||||||||||||||||| |||||||||| |||||||||||||||||||||||||                |||||  |||||    |||| ||||           ||||||| || ||||   ||||                                                                  A
        TCC ATTTTATACCAAAACCAGG ACGTTTATAC GAGTAAAACCAAAATCAGGGACATT                CTAGG  ACGTT    TATA AGAG           CCAGGGA CG GGTG   ACAC                                                                  
AAGAAAAA   A                   A          A                         AAAAAAAAAACAAAAA     -G     ----    C    CAAAATCAAAA       C  G    AAA    TACTAAACGTGTACACCGTGTACTACTCACTTGGGTAAATAATCTTTTTATCAGGGACGTTTTAGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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