SE2020412

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5614
  • Medicago truncatula
  • SE2020412
  • Mutator
  • M50
  • MtChr4:9128756-9129102
  • ATATTTATA
  • TATAGGGTTAATA

Secondary structure and sequence

TSD    TIR
5'



3'
ATATT             TATGTTTATCC           AA         A      C    A  GCAA      A           C     C               C    A    C     AC    -  TCAAATTAAAAAATTTA   TACTTTCATCCCCTGTAATTTGAGATAATTTCGGTT
     TATAGGGTTAATA           CATGTAATATT  CGATTTCCG TTTACC TCCT TA    AAAAAA TTGTTTAGATT CAACC TGTAATTTGAAGATT TTTG TTTT GACCT  ATGG CA                 AGG                                    
     |||||||||||||           |||||||||||  ||||||||| |||||| |||| ||    |||||| ||||||||||| ||||| ||||||||||||||| |||| |||| |||||  |||| ||                 |||                                     
     ATATCCCAATTAT           GTACATTATAA  GCTAAAGGC AAATGG AGGA AT    TTTTTT AACAAATCTAA GTTGG ACATTAAACTTCTAA AAAC AAAA CTGGA  AGTA TT                 AAA                                    
ATATT             -----------           GC         C      T    C  ----      A           T     T               T    C    C     --    C  -----------------   ACTGACATCTTTTAGCTACTATACCGTCTTCCCCAT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End