SE2020414

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5616
  • Medicago truncatula
  • SE2020414
  • Mutator
  • M106
  • MtChr5:20898347-20898549
  • TTGTTTGGT
  • GAGGTATTCTTCCATGATCACA

Secondary structure and sequence

TSD    TIR
5'



3' 
TTGTTTGGT    T     TCC         AAAC     C  TAC       A         CA     --T      TAAAATATTCAATCATTTTTTTT
         GAGG ATTCT   ATGATCACA    TAAAT AA   TGTTTGG CACACACAT  AAAGA   GATGTT                       
         |||| |||||   |||||||||    ||||| ||   ||||||| |||||||||  |||||   ||||||                       A
         CTCT TAAGA   TACTAGTGT    GTTTA TT   ACAAACC GTGTGTGTG  TTTCT   TAAAAA                       
TGGTTTGTT    T     TTA         ACTA     T  TTC       A         TA     TTA      AAATTATTATTTCTCCTTTAACT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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