SE2030415

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5617
  • Medicago truncatula
  • SE2030415
  • hAT
  • Hat1
  • MtChr5:24048870-24049467
  • AGAAAGAT
  • TTAGGCATGGTA

Secondary structure and sequence

TSD    TIR
5'



3' 
AGAAAGA            -------    -  C --         C   TTTTGTCTTCCCCATCCCCATCCCCTACTCCCATATACTTACCCGTTACCCTACCCATATCCAACGGGGATGAGAAATTGAATCCCATCCCCGTCCCCAATGGGTTCGGGTATTCCCGCCCCATCCCCATCCCCGCAATGGATCAATTTTTTTAATAAAAAAAAAGTTTTTTTTTAAGCTTCAATAGTAATATTGTAATGCATTATCGAACAATTTGTGTTCATTTTAACATTTCTTTACTGAATAATTCGGTTG
       TTAGGCATGGTA       ATGG GG G  GGGTGGGGA GGG                                                                                                                                                                                                                                                               
       ||||||||||||       |||| || |  ||||||||| |||                                                                                                                                                                                                                                                                
       AATCCGTACCGT       GGCA GT G  CCCATGGGC GGG                                                                                                                                                                                                                                                               
TAGAAAG            TTTTTTA    C  - TA         -   TTTGGTTGGGGCTAAACTGCCCAAAAAGGGTTAAACTGACTCAAACCCATACCCAAATCCAAAAGGGGCTAAAGTTTTATGCCCATGCCCTACCCATTGCCTCTATATACATGGGTGGGGCTTGGGTATGGTTTTGGGATGGGCTTACATCTTTCCAGTATAAAAACAAAAAAAATCCCCCAACTATTACTATACAGTAGAATAAACCAAACTATTAACAGTACTATATTCTTGAAAGCAACTATCAATTTCGTC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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