SE2020416

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5618
  • Medicago truncatula
  • SE2020416
  • Mutator
  • M84
  • MtChr2:4186593-4187005
  • TAAATTAAT
  • ATTAATGGGTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TAA      ---     AAATAT                          C             C                                          T                   A   T                A             A           A   ----AA   AAG  CTATTCTTCAAAGTTACGCAAAAT
   ATTAAT   GGGTT      GTTTTTAGTCCTTGTATTTTGCGCCC TTTGAAGAATAGT CCTACATTTCATTAAATGTTTTTAAAATCTTCACATTTTATC CCGTTATCAAAATTAGTCC TGC GTTAATTTTCTAACGG ATGTTGATGTGGC GTTAGTGGGTC CAA      TGT   GA                        
   ||||||   |||||      |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||| ||||||||||||| ||||||||||| |||      |||   ||                         
   TAATTA   CCCGA      TAAAAATCAGGAATATAAAACGCGGG AAACTTCTTATCA GGATGTAAAGTAATTTACAAAAATTTTAGGAGTGTAAAATAG GGCAATAGTTTTAATCAGG ACG CAATTAAGAGATTGCC TACAATTACACCG CAATTACCCAG GTT      ATC   CC                        
         AAT     ----CT                          A             A                                          T                   G   T                C             C           G   AATAAA   ---  AATTTATACAAAAAACCAGGGATG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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