SE2010417

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5619
  • Medicago truncatula
  • SE2010417
  • Tc1/Mariner
  • St18
  • MtChr1:2469837-2470129
  • TA
  • TACTCCCTCCGTTTCACAAGGAGTGTTGTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
      ---   C         G           -    TT     CA   AT         G     AGTAATCATTAAACATAATATTTTTACTAAACTGTCATTCCTTTATAAGAAAAAGACAAACTTAAAGATGCATTGAAAATTGTG
TACTCC   CTC GTTTCACAA GAGTGTTGTTT AAGG  TGACA  TAG  TAAGAAATG AATGA                                                                                    
||||||   ||| ||||||||| ||||||||||| ||||  |||||  |||  ||||||||| |||||                                                                                     
ATGAGG   GAG CAAAGTGTT CTCACAGTGAA TCGT  TTTTT  TTT  TTTTTTTAA TTTTA                                                                                    
      ATC   C         A           A    --     --   --         -     CTTACAGTGGAATGTAAAAGTTATGTTGAAATTAGAAAAAGAAAGTTGAAATGGGAGTTATTTATGAGTTTGAAAAGAGAGAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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