Plant MITE

SE2020422

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5624
Medicago truncatula
SE2020422
Mutator
M107
AC233676:149504-149705
AAAAACAAA
GAGTTTAATTTCGGTGGGTTGACAGTTCAAAACAGTTTTGCACACATAACCAATCAAAACATTCTAAATTGCCACATT

Secondary structure and sequence

TSD TIR

5'

3'

 AAAAACAAA          TC     G     A                  C      C         C   CTA     C  C   TAACCCACATA      AA
          GAGTTTAATT  GGTGG TTGAC GTTCAAAACAGTTTTGCA ACATAA CAATCAAAA ATT   AATTG CA ATT           AATTAA  
          ||||||||||  ||||| ||||| |||||||||||||||||| |||||| ||||||||| |||   ||||| || |||           ||||||  T
          CTCAAATTAA  CCACC AACTG CAGGTTTTGTCAAAACGT TGTGTT GTTAGTTTT TAA   TTAAC GT TAG           TTAATT  
TAAACAAAAA          TA     -     C                  C      A         A   AAC     A  A   -----------      AC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020422

AAAAACAAAGAGTTTAATTTCGGTGGGTTGACAGTTCAAAACAGTTTTGCACACATAACCAATCAAAACATTCTAAATTGCCACATTTAACCCACATAAATTAAAATCATTAATTGATATGACAATTCAAAATATTTTGATTGATTGTGTCTGCAAAACTGTTTTGGACCGTCAACCACCATAATTAAACTCAAAAACAAAT

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