SE2020424

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5626
  • Medicago truncatula
  • SE2020424
  • Mutator
  • M108
  • MtChr7:27076646-27076842
  • TTAATTATA
  • TAATTATAGGGTCTTGCTAACCATTGC

Secondary structure and sequence

TSD    TIR
5'



3'
 T      T    TCT  C          TCAG    A   T     T   C     TA    C   -ACA       -----------------   --      A    C
  TAATTA AGGG   TG TAACCATTGC    GGCA TGG TAAGG AAC AAAAT  GTAG TTT    TTGGAAA                 CAA  CAATTT TAAA 
  |||||| ||||   || ||||||||||    |||| ||| ||||| ||| |||||  |||| |||    |||||||                 |||  |||||| |||| T
  ATTAAT TCCC   AC ATTGGTAACG    TCGT ACC ATTTC TTG TTTTA  TATT AAA    AACCTTT                 GTT  GTTGAA ATTT 
AT      -    TTT  A          ----    A   T     C   T     --    T   ACAC       TACTATTTTTTTTATCA   TA      C    T

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End