SE2020427

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5629
  • Medicago truncatula
  • SE2020427
  • Mutator
  • M11
  • MtChr8:16134917-16135109
  • TTAATAAAA
  • AAGGGTCTTGTTAACGAGTGCCCCCGAGACACTCTTTAAGCATC

Secondary structure and sequence

TSD    TIR
5'



3' 
TTAATAA     TCT            C    GAG                CCAAA     CAATAATTC      ---     CAAC    ACAATTTCC
       AAGGG   TGTTAACGAGTG CCCC   ACACTCTTTAAGCATC     TTTAA         TTTTAA   AAAGT    TATT         
       |||||   |||||||||||| ||||   ||||||||||||||||     |||||         ||||||   |||||    ||||          
       TTCCC   ACAATTGCTCAT GGGG   TGTGAGAAATTCGTGG     AAATT         AAAATT   TTTCA    ATAA         
AAAATAA     TTT            A    -AA                -----     TACCTTTCA      ACT     ACAC    CTTACGTAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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