SE2020430

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5632
  • Medicago truncatula
  • SE2020430
  • Mutator
  • M39
  • MtChr6:13749844-13750165
  • TTAATCAAA
  • AAGGCTAAAATATGGTTTTAGTCCCTGCAAATATGCATCGTTTTGGTTTTAGTTCCTGATAAAAAAAAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TTAATCA                                    A                     A           ATATATATAA         ---GTC   -     ATTTTTTGTTTTTGAAAATAGTCCCTGACCCCACTTTTGTGATGATTTGCATACGTG
       AAGGCTAAAATATGGTTTTAGTCCCTGCAAATATGC TCGTTTTGGTTTTAGTTCCTG TAAAAAAAAAT          TTGTTTTTG      CCT GCAAA                                                         
       |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||          |||||||||      ||| |||||                                                          
       TTCCGATTTTATACCAAAATCAGGGACGTTTATACG AGCAAAACCAAAATCAGGGAC ATTTTTTTTTA          AACAAAAAC      GGA AAAAT                                                         
AAACTAA                                    G                     C           ----------         GTCCCT   A     TTTTGTTTTATAAAACGTCCCTGGTTTTTGATGTTTTAACCAAGTCAATATTACACG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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