SE2020431

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5633
  • Medicago truncatula
  • SE2020431
  • Mutator
  • M52
  • MtChr3:31655150-31655738
  • TAAATAAAG
  • GGCTTAAATGCTCTTTTGGTCCCTTAACTATTTAATTGGTATCGCTTTGGTCTCTTAACTAAAAAAAAGATTCTTTGAGGATTTTAAGTTTTTTTTTAGTCTCGTTTTGGTCCTTTCTGTTAGGTTTCCGTTAGGGTTTTAAAAAAAAGTTAA

Secondary structure and sequence

TSD    TIR
5'



3'
TAAATAAA                  G                                C                    C                                                             GG  -T        A     CTTC                  C             T   T       -TTTT   TT    --TTC       -          -       --A           -AAAG          C           CCCAG
        GGCTTAAATGCTCTTTTG TCCCTTAACTATTTAATTGGTATCGCTTTGGT TCTTAACTAAAAAAAAGATT TTTGAGGATTTTAAGTTTTTTTTTAGTCTCGTTTTGGTCCTTTCTGTTAGGTTTCCGTTAG  TT  TAAAAAAA GTTAA    TGGACACGTGTCACCTTG CATTGGCTCTGAG TTT TTTTTTT     AAA  ATTA     TTTTAAA ATATATATAT ATTTTTT   AAAAAAATTCC     TCAATGACAA GTGACACGTGT     
        |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||  |||||||| |||||    |||||||||||||||||| ||||||||||||| ||| |||||||     |||  ||||     ||||||| |||||||||| |||||||   |||||||||||     |||||||||| |||||||||||      
        CCGAATTTACGAGAAAAC AGGGAATTGATAAATTAACCATAGCGAAACCA GGAATTGATTTTTTTTCTAA AAACTCCTAAAATTCAAAAAAAAATCAGAGCAAAACCAGGGAAGACAATCCAAAGGCAATC  AA  ATTTTTTT CAATT    ACCTGTGCACAGTGGAAC GTAACCGAGACTC AAA AAAAAAA     TTT  TAAT     AAAATTT TATATATATA TAAAAAA   TTTTTTTAAGG     GGTTACTGTT CACTGTGCACA     
   AAATA                  G                                A                    C                                                             AA  TT        G     -TCC                  A             T   T       TATTT   TT    TAAAA       A          A       ACA           ATCTT          C           ATTGA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End