SE2030435

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5637
  • Medicago truncatula
  • SE2030435
  • hAT
  • Hat11
  • MtChr3:31171197-31171747
  • GTGACAGC
  • GT

Secondary structure and sequence

TSD    TIR
5'



3'
  GACA           GC   -  - T  - AAATGGATGACGTATTGTATCCTCTGTGTATCCTGCACCGATACCTTCCTGATACTTCCCGATACATATCTGGAGAGTATCCGAAGATTAAATTTTATTTTTAAAAAAAATAATTATCCGGTACTTCCCGATACGTATCAGGAGAGTATCCGATAATTATCCTGCACTGATACATGCCCCAATACTTCCCAATTAATGTTAAGTAAAATAACTTAACTCTTGAGTATAGTGTTTCTTTTTTAGATC
GT    GCCTGTGAAGC  CGA TA C TC A                                                                                                                                                                                                                                                      
||    |||||||||||  ||| || | || |                                                                                                                                                                                                                                                      G
CG    TGGACACTTCG  AGC TA G CT T                                                                                                                                                                                                                                                      
  ACAG           --   C  C -  C ATGCTATGTCTATACTATGACGTAACTATGCAGCTATGCTCTTTTAAAGTTTTTAGTTATATGCTATGCCAACACTATGCAATTATTTTTTTAATATATTATTTTACATGTTATATTAATATTGGTAAAAAAATTATACGCTTATATAATTGTTTGTTTTCTTTGGTCAGTATCCGAGCATCGTGTAGTTGTATTTATATTTATTATAACTGCTAATTCTCTCACTACTAATCATGATATGATATA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End