Plant MITE

SE2020436

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5638
Medicago truncatula
SE2020436
Mutator
M8
MtChr4:6239144-6239446
TAAAATTAA
AGGGTTAATTAAGT

Secondary structure and sequence

TSD TIR

5'

3'

TAAAATTA              TTTTA               AAC                                        -           C       TTA        A  GA CAAAAATGTTG      A     G -   G ACCA
        AGGGTTAATTAAGT     GTCCCTATAAATATT   AGTTTTGTTTTTAGTCCCTACAAAATAAAATCACATTTTT AGTCCCTATGA ATTTTCC   AGCATTTT GG  C           ATGGAA TTTTT A CAG G    
        ||||||||||||||     |||||||||||||||   |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||   |||||||| ||  |           |||||| ||||| | ||| |     
        TCCCAATTAATTCA     CAGGGATATTTATAA   TTAAAACAAAAATTAGGGATGTTTTATTTTAGTGTGAAAA TCAGGGATATT TAAAAGG   TCGTAAAA TC  G           TATTTT AAAAG T GTC T    
AATTAAAA              TTTAC               GTC                                        A           C       TAG        A  AG ---------AA      A     G A   G ACAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020436

TAAAATTAAGGGTTAATTAAGTTTTTAGTCCCTATAAATATTAACAGTTTTGTTTTTAGTCCCTACAAAATAAAATCACATTTTTAGTCCCTATGACATTTTCCTTAAGCATTTTAGGGACCAAAAATGTTGATGGAAATTTTTGACAGGGACCAAACATGCTGATGGAAAAATTTTATAAGGACTAAAAATGCTGATGGAAAATCTTATAGGGACTAAAAAGTGTGATTTTATTTTGTAGGGATTAAAAACAAAATTCTGAATATTTATAGGGACCATTTACTTAATTAACCCTAAAATTAA

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