SE2010437

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5639
  • Medicago truncatula
  • SE2010437
  • Tc1/Mariner
  • St32
  • MtChr2:3733972-3734592
  • TA
  • TACTCCTTTCGT

Secondary structure and sequence

TSD    TIR
5'



3' 
            ------------------    TT   -A  G --  - T  ATAGTGAATTTTTCGTTTCTATTTAACTGTCTTTTTGATATTTTCAGGGTAAGATTTGTCAATTATAGAATTTGTCAATTACTTTTATTTTTTCAATAAAACTAATTATTGCTATCTATTTGAAAAACTAAAGTTTGTTTCTCATTATCTTCAAATTTAAACAAATTTTGTTCCAAACAATGGTTCCAATAAGAGTTTAAATTCTAAAAATAAGATAAGTAACAATTATTAAAAATTTCAAGTGTGACTCTAGCATTGGTTGAAGCCAT
TACTCCTTTCGT                  TCCT  TTA  GC T  CT C TT                                                                                                                                                                                                                                                                             
||||||||||||                  ||||  |||  || |  || | ||                                                                                                                                                                                                                                                                             A
ATGAGGGAGGTA                  TCTT  TTA  TG T  TT T GT                                                                                                                                                                                                                                                                             
            AAAAAAATACAAGAAAAA    --   AT  - AG  T -  TGCTACACATAAAAACGTGTAAAAGAAGGATAATATGGGAGTAAAATTAAGTAGTTATTTAAGGATGAAAAACGTGTGTAAAATATAAAAGTTAGTTAAATTATACAATAGAAAGAGAGAATTGTTTGTTAACAGTTAAAAGATTTATAACACGTGTAGAAAAACTAATAAAATTCAGTTATATTTTTAATAAGGTTGAAGTGTAATTAGTTTTCAATTCTTTTTTAATTGAAAGAAGGTTGAGGAAATTAGTTTCAATTCCGAAGTTG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3