Plant MITE

SE2020440

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5642
Medicago truncatula
SE2020440
Mutator
M23
MtChr5:19972138-19972304
TTTGCTTGG
GCTTGGGGAAAATACTTGGGTGACATAGAGTTGGGT

Secondary structure and sequence

TSD TIR

5'

3'

 TTT  TT    AA                          AACATTGGT               C   AC  C          TTTCTC
    GC  GGGG  AATACTTGGGTGACATAGAGTTGGGT         GACATTGGTCAATCA AAT  CA AATGCTTGTG      
    ||  ||||  ||||||||||||||||||||||||||         ||||||||||||||| |||  || ||||||||||      T
    CG  TCCC  TTGTGAACCCACTGTATCTCAACCCA         CTGTAATTGGTTAGT TTA  GT TTACGAACAC      
GGTT  TT    -A                          ---------               A   CA  -          TTTCTC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020440

TTTGCTTGGGGAAAATACTTGGGTGACATAGAGTTGGGTAACATTGGTGACATTGGTCAATCACAATACCACAATGCTTGTGTTTCTCTCTCTTTCACAAGCATTTGACATTATGATTGGTTAATGTCACCCAACTCTATGTCACCCAAGTGTTACCCTTTGCTTGG

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