Plant MITE

SE2020447

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5649
Medicago truncatula
SE2020447
Mutator
M29
MtChr1:25064755-25065098
TTTTTATTA
AGGCCAAACATCTCCTCGGATCATTTAAGTTTCATGTTTGTTTCAGATAG

Secondary structure and sequence

TSD TIR

5'

3'

TTTTTATT   C    C  C    C  A                              -----------A     AAGTTTCTAAGGTTTCAGATAGGTCCTTTAAATTTCGAGTTTGCTTCATATAGGCCTTTCTATCAATCTCCGTTAAGCCAAAGTTGATTTGATAGAAAGGAC
        AGG CAAA AT TCCT GG TCATTTAAGTTTCATGTTTGTTTCAGATAG            TCTTT                                                                                                      
        ||| |||| || |||| || ||||||||||||||||||||||||||||||            |||||                                                                                                      C
        TCC GTTT TG AGGG CT AGTAAATTCAAAGTGCAAACAAAGTCTATC            AGATT                                                                                                      
ATTATTTT   A    A  A    A  C                              CAATAAATTCAA     CCAAAGTCTATCCAGGAAATTCAAAATTCAAACAAAGCCTATACAGTAAATTCAAAGATTCCAAAGTCTATCCAGGAAATTCAAAGCTCAAACAAAGTCTAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020447

TTTTTATTAGGCCAAACATCTCCTCGGATCATTTAAGTTTCATGTTTGTTTCAGATAGATCTTTAAGTTTCTAAGGTTTCAGATAGGTCCTTTAAATTTCGAGTTTGCTTCATATAGGCCTTTCTATCAATCTCCGTTAAGCCAAAGTTGATTTGATAGAAAGGACCTATCTGAAACAAACTCGAAACTTAAAGGACCTATCTGAAACCTTAGAAACTTAAATGACATATCCGAAACAAACTTAAAACTTAAAGGACCTATCTGAAACCTTAGAAACTTAAATAACCTATCTGAAACAAACGTGAAACTTAAATGACTCAGGGAAGTATTTGACCTTTTTATTA

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