Plant MITE

SE2020455

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5657
Medicago truncatula
SE2020455
Mutator
M2
MtChr1:30674320-30674519
TTTCATAAA
AAAGAACAATGATATTTGTACATCCATTT

Secondary structure and sequence

TSD TIR

5'

3'

 TTTCAT     AC               T      AATG        GG          G         CTTTTGATTGGTCAAAAACAATGGAGAGAGA
       AAAGA  AATGATATTTGTACA CCATTT    ACAACTTT  TGACAATTTT TTTTCCTCT                               
       |||||  ||||||||||||||| ||||||    ||||||||  |||||||||| |||||||||                                
       TTTCT  TTACTATAAACATGT GGTAAA    TGTTGAAA  ACTGTTGAAA AAAGAGTAT                               
AAAATAC     CT               T      ACGA        -A          G         GAGTATACTATAATAGGAGAGAGAAAGAAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020455

TTTCATAAAGAACAATGATATTTGTACATCCATTTAATGACAACTTTGGTGACAATTTTGTTTTCCTCTCTTTTGATTGGTCAAAAACAATGGAGAGAGAAAAAGAAAGAGAGAGGATAATATCATATGAGTATGAGAAAGAAAGTTGTCAAAAAGTTGTAGCAAAATGGTTGTACAAATATCATTTCTCTTTCATAAAA

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