SE2020456

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5658
  • Medicago truncatula
  • SE2020456
  • Mutator
  • M53
  • MtChr5:9466368-9466794
  • ATATTTTTA
  • TTCTACGGTACACTCAC

Secondary structure and sequence

TSD    TIR
5'



3' 
ATATTTTTAGAGAAC     C           --AAAA    G           T C     C    --     --        ------------------------------C   CA        -- TATTAAATAG    TTGTCAATATTTATATTTTATAGAACAACATTTCATAAGAAAAACATCATTTAATTGTTTATAAGAATCAAAGTAACTTTTTTTACATATTATC
               TTCTA GGTACACTCAC      TGAG TGTACCGGTAC C TACTT TTAA  TTATA  TAAATGAA                               GAT  TTTTTTAT  G          CTAT                                                                                              
               ||||| |||||||||||      |||| ||||||||||| | ||||| ||||  |||||  ||||||||                               |||  ||||||||  |          ||||                                                                                               
               AAGAT CTATGTGGGTG      ACTC ACATGGCCATG G GTGAG AATT  AGTAT  ATTTACTT                               TAG  TAAATATT  T          ATCA                                                                                              
ATTTTTATACCGTTT     A           ATATAA    -           T A     A    TA     CA        AACAAAAAACTTCTTTTTATAAAAAAAAAAA   --        AA ----------    TTGATTTAGAATAAGTAGTTTTCACAGTTTCTTTATTAAAAAATAAAAAAATTTAAAAATAGTGAGTATTAACTCTTGTAAGTAATAAAAAATG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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