SE2020457

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5659
  • Medicago truncatula
  • SE2020457
  • Mutator
  • M78
  • MtChr7:24948195-24948584
  • ATTTTAAAA
  • TTTTAAAAGGAGAAAACTATCAAATTAGTCTCTGTCTTTGTACCAAATTCTTAAATTGGTCCCTGACTCTATTAATAACTCAAAATGGTCCCTGTCTTTCTCAAACGTTTCTCAGATTGGTCCCTAACTCTATTAGTTGTTTTGCATTTTAAGT

Secondary structure and sequence

TSD    TIR
5'



3' 
A        G   A                                    C    A                                   CC       C     C             G     A                  C     A   CATTAAC T   AAATAAGATCCAAAAGGCATTATGTCAT
 TTTTAAAA GAG AAACTATCAAATTAGTCTCTGTCTTTGTACCAAATT TTAA TTGGTCCCTGACTCTATTAATAACTCAAAATGGTC  TGTCTTT TCAAA GTTTCTCAGATTG TCCCT ACTCTATTAGTTGTTTTG ATTTT AGT       G ATC                            
 |||||||| ||| |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||  ||||||| ||||| ||||||||||||| ||||| |||||||||||||||||| ||||| |||       | |||                            T
 AAAATTTT CTC TTTGGTGGTTTAATTAGAGACGGAAACATGGTTTAA AGTT AGCCAGGGACTGAGATAATTATTGAGTTTTATCAG  ACAGAAA AGTTT CAAAGAGTCTAAC AGGGA TGAGATAATCAACAAAAC TAAAA TCA       T GGG                            
G        A   A                                    C    A                                   AT       C     A             G     C                  A     C   CAATAAC -   TTACAGAAAACCTATAAAAAATCACCAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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