SE2030461

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5663
  • Medicago truncatula
  • SE2030461
  • hAT
  • Hat20
  • MtChr2:818001-818627
  • GGCCAAAC
  • GGCC

Secondary structure and sequence

TSD    TIR
5'



3' 
        AAAC                  CCCAATGGGTAGGGTACTACAATGCCCATCCTCATACCCACATTTGTAAAAATTACTCGTACCCGTGCCCGTATCCTCGTGGGCAACAACTTTAGTGCCCTTCCCCATATCCTATGGGTACCTAAGTGCCCATACCCGCACCCATTATCCGCACTTTAACTATGAAAAGACAATAAAAATATCACAATTGAAATAAAACTATGGTCTACATCTTTTAAAATTAACTCATAAAATAATATGAATCGTAGTATTTAATCAAATTAAAAACATCCAAAATATCTCTTAAA
    GGCC    TAGGGATGGCAATGGGTA                                                                                                                                                                                                                                                                                               
    ||||    ||||||||||||||||||                                                                                                                                                                                                                                                                                               A
    CCGG    ATCCCTACCGTTAACCTG                                                                                                                                                                                                                                                                                               
CAAA    ----                  AGTCCGGGTTACCTATGAGCGTATTTTATGGGTGTTACCCATCCCATTTTGGGGCGATAGTACCCAGACCCCTGCCCAGGCCCATTATAGGTGCTTAAATTTACCCATACCCGTGCCCATTCCCATGATATGACGGGTTGGGGCGTATATGTATAAATAAATTATAGTATTCATTAAAAAAAAAATCACATATTAATTTATTAAATAAATCGATAAATTCGGATTTGATTTTGTATTTAGTCTTTTAACGAATTATGTTATTTTTGAGGTAGAACGGCCACATGTTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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