SE2020462

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5664
  • Medicago truncatula
  • SE2020462
  • Mutator
  • M73
  • MtChr3:258842-259175
  • TTGATTTAA
  • TGATTTAAGAGCAATGATAGGTAGACACCCTTAATATGTTCACCCGTTTACCACTCAGAAAAATTCCAGTTAACCAAATATATTGTCTGTGTGACCACGTTTTTTAGTTGCGTGACCACTATTT

Secondary structure and sequence

TSD    TIR
5'



3'
T   T       C  T   A                A   T     G  --        -A     A   C          ATA   T                     -A                  TT   TAATTTATTTGGTTAACTAAGTGGAAAAAAGTGGTC
 TGA TTAAGAG AA GAT GGTAGACACCCTTAAT TGT CACCC TT  TACCACTC  GAAAA TTC AGTTAACCAA   TAT GTCTGTGTGACCACGTTTTTT  GTTGCGTGACCACTATTT  CCA                                    
 ||| ||||||| || ||| |||||||||||||||| ||| ||||| ||  ||||||||  ||||| ||| ||||||||||   ||| |||||||||||||||||||||  ||||||||||||||||||  |||                                     
 ATT AGTTCTT TT CTA CCATCTGTGGGAATTA ACA GTGGG AA  ATGGTGAG  CTTTT AAG TCAATTGGTT   ATA CAGACACACTGGTGTAAAAAA  CAATGCACTGGTGATAAA  ATT                                    
A   T       A  T   A                C   T     G  AC        AG     A   -          AAA   C                     GA                  -T   CGACTTTTTTATACCAGTGCGTTGATTTTACGCGCA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End