Plant MITE

SE2050465

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5667
Medicago truncatula
SE2050465
PIF/harbinger
To11
MtChr8:19145887-19146138
TTA
AGGGTGTGTTTGGATGGAGGGTTTAGGAGGGGAAGAAAGGGGAGGGTTTAAATTTCATTTTTAAATTACGGACACTATAAAATATTTTTTGAAGAGT

Secondary structure and sequence

TSD TIR

5'

3'

TT               ---GG                   A            AAA   CA                AC    A     -     GA     TAACAT     CA  A   A   TCATAT
  AGGGTGTGTTTGGAT     AGGGTTTAGGAGGGGAAGA AGGGGAGGGTTT   TTT  TTTTTAAATTACGGAC  TATA AATAT TTTTT  AGAGT      ATTAA  TG TAA TGA      
  |||||||||||||||     ||||||||||||||||||| ||||||||||||   |||  ||||||||||||||||  |||| ||||| |||||  |||||      |||||  || ||| |||       
  TCCCACACAAGTTTA     TCCCAAATCCTCCCCTTCT TTCCCTCTCAAA   AAA  AAAAATTTAATGTCTG  ATAT TTGTA AAAGA  TCTTA      TAATT  AC ATT ACT      
AT               AGTAG                   C            AAA   AA                --    A     C     GA     ----TT     -C  -   A   TCATAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2050465

TTAGGGTGTGTTTGGATGGAGGGTTTAGGAGGGGAAGAAAGGGGAGGGTTTAAATTTCATTTTTAAATTACGGACACTATAAAATATTTTTTGAAGAGTTAACATATTAACATGATAAATGATCATATAATACTTCAATTACACTTAATTTATTCTAGAGAAACATGTTATATAGTCTGTAATTTAAAAAAAAAAAAAAAACTCTCCCTTCTCTTCCCCTCCTAAACCCTGATGAATTTGAACACACCCTTA

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