SE2020467

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5669
  • Medicago truncatula
  • SE2020467
  • Mutator
  • M55
  • MtChr7:3923063-3923743
  • TTACATATA
  • AGGCCAAATACCACGTTTGGTCCTTTTAATTTGACAGAATTCCCAAGTTAGTCCTTTTAAGTTTCAAAAGTTTCAAATAGATCCTTTTAGTTTGATAAAATTCCCAAGTTAGTCCTTT

Secondary structure and sequence

TSD    TIR
5'



3'
TTACATAT              G             A                            T      CA          A   A                A                    TAAGTTTCAA                C             A                     A      TAATAA                     A            C  G        C  C           T                       GT               -     ---C       ATAAATGTTGTTTAATTGTGCTAGAAATG
        AGGCCAAATACCAC TTTGGTCCTTTTA TTTGACAGAATTCCCAAGTTAGTCCTTT AAGTTT  AAAGTTTCAA TAG TCCTTTTAGTTTGATA AATTCCCAAGTTAGTCCTTT          AAGTTTCAAATAGGTC TTTTAGTTGATAA CTATTTCACCGTTACCCCTGC GTCAGT      TTAATTGATGTTGATGTAGTC TTAAGTTGTTGA TT GATCAAAA GC GCCTTTTAAAA CTCCAGGGTGTCAAAACGTTACG  TAATGGTCACAAATA TCATT    TAGCATT                             
        |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| ||||||  |||||||||| ||| |||||||||||||||| ||||||||||||||||||||          |||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||      ||||||||||||||||||||| |||||||||||| || |||||||| || ||||||||||| |||||||||||||||||||||||  ||||||||||||||| |||||    |||||||                              
        TCCGGTTTATGGTG AAACCAGGAAAAT AAACTGTTTTAAGGGTTCAATCAGGAAA TTCAAA  TTTCAAAGTT ATC AGGAAAATCAAACTGT TTAAGGGTTCAATCAGGAAA          TTCAAAGTTTATTCAG AAAATCAACTATT GATAAAGTGGCAATGGGGACG TAGTCA      AATTGACTACGACTACATCAG AATTCAACAACT AA CTAGTTTT CG CGGAAAATTTT GAGGTCCCACAGTTTTGCGATGC  ATTACCAGTGTTTAT AGTAA    CACGATC                             
ATATACAT              A             C                            -      -A          A   C                C                    ----------                A             -                     A      TAGGCA                     C            C  A        A  A           C                       AA               T     ATAT       TTTCCGTCTATAAAAATGTTGTTGTTTAC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End