Plant MITE

SE2020472

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5674
Medicago truncatula
SE2020472
Mutator
M113
MtChr2:27314118-27314309
TTAATTATG
TAATTATGGGTCTTGTTAACGAGTACTCCCGAGGCATTCTTTAAG

Secondary structure and sequence

TSD TIR

5'

3'

T      T   -TCT            C     A             CATATTAAATTA       ATT  TTAAAAAAATTCAAATAGTTCAATTTCCAA
 TAATTA GGG    TGTTAACGAGTA TCCCG GGCATTCTTTAAG            GGAAATT   CT                              
 |||||| |||    |||||||||||| ||||| |||||||||||||            |||||||   ||                              T
 ATTAAT CCC    ACAATTGCTCAT GGGGC TCGTGAGAAATTC            ATTTATT   AT                              
T      T   CTTT            A     C             -------CCAGA       ---  TAAAAAATACTTTTTAATACATAAGTAACG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020472

TTAATTATGGGTCTTGTTAACGAGTACTCCCGAGGCATTCTTTAAGCATATTAAATTAGGAAATTATTCTTTAAAAAAATTCAAATAGTTCAATTTCCAATGCAATGAATACATAATTTTTCATAAAAAATTATTATTTAAGACCCTTAAAGAGTGCTCCGGGGATACTCGTTAACATTTCCCCTTAATTAT

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