SE2030474

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5676
  • Medicago truncatula
  • SE2030474
  • hAT
  • Hat33
  • MtChr4:12908386-12908630
  • ACTACACT
  • TCATGGGCGG

Secondary structure and sequence

TSD    TIR
5'



3' 
ACTACAC   TG     TTCTAT       --------CGAC    --   ACTCGCCCGGGCTCCGGCCCAAATTTTTTTCAATTTCTTATGTAAATTCCTATGAATTTCTTATATAACCCCCTATAAA
       TCA  GGCGG      GGCCAGG            CCCG  GGC                                                                               
       |||  |||||      |||||||            ||||  |||                                                                               T
       AGT  CCGCC      TCGGTCC            GGCC  GTT                                                                               
TCACATC   CA     ------       TAATAACATTTC    CC   TTTATATAACGTTGTGTAAATATCCCCAAATGTATTCTTTAACGTTCGTTTATTATTTTTTTAGATTTCTTTAACGGGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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