SE2020482

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5684
  • Medicago truncatula
  • SE2020482
  • Mutator
  • M1
  • MtChr3:34364207-34364593
  • TTTAATAAA
  • TTAATAAAGGTCAAATGCATCTAAAGGTCCTTAAAGTTTTTCGTTTTTCCCAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
T   A                            A        C       C    -   --    TTTTAGTTTTTGAATCGTTTCAGAATCATACTTTCCCTCTGAAAGCTAGGCAACAATGGTCTATGAATAAACTCTTCTCCATTACCTTCTTCACTTTGTTCAGTTGGTTGAACTTTGATCTGCACTGTGC
 TTA TAAAGGTCAAATGCATCTAAAGGTCCTT AAGTTTTT GTTTTTC CAAA GTG  GTCC                                                                                                                                  
 ||| |||||||||||||||||||||||||||| |||||||| ||||||| |||| |||  ||||                                                                                                                                   
 AAT ATTTCCAGTTTACGTAGATTTCCAGGAA TTCAAAAA CAAAAAG GTTT ACC  GAAA                                                                                                                                  
A   A                            A        A       A    T   AG    TTCAAAGTTTTCAGGGTCACACCAGGAAAATCAAAAACTTAGCAAAGTCTTAGTATGAAAGGCAGTAAATTCCTCGTTAAATCTTCCGAAATACTAATACCAGTACTCAACTAATCTAGTTTAGGAGTAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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