SE2010485

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5687
  • Medicago truncatula
  • SE2010485
  • Tc1/Mariner
  • St34
  • MtChr5:41495209-41495495
  • TA
  • TACTCCCTCCGTTCCAAATTATATGTCACTTTAGCGATTTCACATAGATTA

Secondary structure and sequence

TSD    TIR
5'



3' 
      C                     C    G   -T    ----CA       AGAA      CTAATGTTGTATAGAAAGGAGTAATTGTGAGTTATTTTACAAAAAATATCCTTTATTATTGGTATTGGAAAACATAAATT
TACTCC TCCGTTCCAAATTATATGTCA TTTA CGA  TTCA      TAGATTA    ATGCAA                                                                                
|||||| ||||||||||||||||||||| |||| |||  ||||      |||||||    ||||||                                                                                A
ATGAGG AGGCAAGGTTTAATATACAGT AGAT GTT  AAGT      GTTTAAT    CAGTGA                                                                                
      T                     A    G   TT    AAACAG       -ATA      AATGTTATTGTTCCTTAGTAACTGCAAATAAAAGGATAATACGGGGAATGATAAATAATGAAATAGAAAAAGCTTAAGAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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